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AT4G30860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18252252 (2008): nucleus nuclear matrix chromatin
  • PMID:17978851 (2008): nucleus nuclear matrix chromatin
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain group 4
Curator
Summary (TAIR10)
Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.
Computational
Description (TAIR10)
SET domain group 4 (SDG4); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH3 (TAIR:AT2G44150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30860-MONOMERBioGrid:14497EC:2.1.1.43eggNOG:COG2940
eggNOG:KOG1081EMBL:AB195469EMBL:AL022198EMBL:AL161577
EMBL:AY050894EMBL:AY096675EMBL:CP002687EnsemblPlants:AT4G30860
EnsemblPlants:AT4G30860.1entrez:829210GeneID:829210Genevisible:Q949T8
GO:GO:0000785GO:GO:0005634GO:GO:0007275GO:GO:0008168
GO:GO:0008270GO:GO:0016568Gramene:AT4G30860.1hmmpanther:PTHR22884
hmmpanther:PTHR22884:SF285HOGENOM:HOG000005950InParanoid:Q949T8IntAct:Q949T8
InterPro:IPR001214InterPro:IPR001965InterPro:IPR003616InterPro:IPR006560
InterPro:IPR019786InterPro:IPR025787KEGG:ath:AT4G30860OMA:FGPEVKC
PaxDb:Q949T8Pfam:PF00856Pfam:Q949T8Pfscan:PS50280
Pfscan:PS50868Pfscan:PS51215Pfscan:PS51578PhylomeDB:Q949T8
PIR:C85361PRIDE:Q949T8PRO:PR:Q949T8PROSITE:PS01359
PROSITE:PS50280PROSITE:PS50868PROSITE:PS51215PROSITE:PS51578
ProteinModelPortal:Q949T8Proteomes:UP000006548RefSeq:NP_567859.1scanprosite:PS01359
SMART:SM00249SMART:SM00317SMART:SM00508SMR:Q949T8
STRING:3702.AT4G30860.1SUPFAM:SSF82199TAIR:AT4G30860tair10-symbols:ASHR3
tair10-symbols:SDG4UniGene:At.26551UniProt:Q949T8
Coordinates (TAIR10) chr4:+:15024546..15027427
Molecular Weight (calculated) 56124.40 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.50
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)