AT3G02820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits to 415 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:611573..613294 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31837.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESAPTGCFK CGRPGHWSRD CPSSAPVAGN NSVSSSSAPS QIPNNEFQRS SSKSGTSIAP APKVTKTRVQ RPKLTPELLL SEDGLGYVLR YFPKSFKYRG 101: RGKEVSDLGN LIRLYSEWHT HLLPYYSFDH FVHKVQQVAS TKRVKNCINE LRERVASGVD PNKLYEKQEE NTVPSDDQDM DQPSHDEENI PSKSVDADTN 201: ADAFEDSMLN EIFDNASKLP SDEQNMDKSS ELTEEQRARM EANRLKAMEK AQNISEEQRV RMEANRLKAL ERAKARLQPN QD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)