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AT5G27910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : nuclear factor Y, subunit C8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit C8 (NF-YC8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C5 (TAIR:AT5G50490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5208eggNOG:KOG1657EMBL:AB493766EnsemblPlants:AT5G27910
EnsemblPlants:AT5G27910.1entrez:832857Gene3D:1.10.20.10GeneID:832857
GO:GO:0005634Gramene:AT5G27910.1hmmpanther:PTHR10252hmmpanther:PTHR10252:SF39
InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT5G27910OMA:IGTPVCC
PaxDb:C0SVR3Pfam:PF00808Pfam:Q4PSE2PhylomeDB:C0SVR3
ProteinModelPortal:C0SVR3RefSeq:NP_198143.1SMR:C0SVR3STRING:3702.AT5G27910.1
SUPFAM:SSF47113TAIR:AT5G27910tair10-symbols:NF-YC8UniGene:At.62434
UniProt:C0SVR3UniProt:Q4PSE2
Coordinates (TAIR10) chr5:-:9940736..9941299
Molecular Weight (calculated) 20610.60 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.45
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MENNNGNNQL PPKGNEQLKS FWSKEMEGNL DFKNHDLPIT RIKKIMKYDP DVTMIASEAP ILLSKACEMF IMDLTMRSWL HAQESKRVTL QKSNVDAAVA
101: QTVIFDFLLD DDIEVKRESV AAAADPVAMP PIDDGELPPG MVIGTPVCCS LGIHQPQPQM QAWPGAWTSV SGEEEEARGK KGGDDGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)