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AT1G25440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G68520.1); Has 3476 Blast hits to 2333 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3380; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AC079281EMBL:AY093174
EMBL:CP002684EnsemblPlants:AT1G25440EnsemblPlants:AT1G25440.1entrez:839130
ExpressionAtlas:Q8RWD0GeneID:839130GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0008270GO:GO:0016020Gramene:AT1G25440.1
hmmpanther:PTHR31874hmmpanther:PTHR31874:SF1HOGENOM:HOG000240360InParanoid:Q8RWD0
InterPro:IPR000315InterPro:IPR010402iPTMnet:Q8RWD0KEGG:ath:AT1G25440
ncoils:CoilOMA:HEVATWHPaxDb:Q8RWD0Pfam:PF00643
Pfam:PF06203Pfam:Q8RWD0Pfscan:PS50119Pfscan:PS51017
PhylomeDB:Q8RWD0PIR:E86384PRIDE:Q8RWD0PRO:PR:Q8RWD0
PROSITE:PS50119PROSITE:PS51017Proteomes:UP000006548RefSeq:NP_173915.2
SMART:SM00336STRING:3702.AT1G25440.1TAIR:AT1G25440UniGene:At.27494
UniProt:Q5XF38UniProt:Q8RWD0
Coordinates (TAIR10) chr1:-:8933939..8935284
Molecular Weight (calculated) 46934.10 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.64
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)