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AT5G47670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B6
Curator
Summary (TAIR10)
Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development.
Computational
Description (TAIR10)
nuclear factor Y, subunit B6 (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1452 Blast hits to 1452 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 484; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
BioGrid:20066eggNOG:COG2036eggNOG:KOG0869EMBL:AB025628
EMBL:AY138461EMBL:BT004183EMBL:CP002688EnsemblPlants:AT5G47670
EnsemblPlants:AT5G47670.1entrez:834818Gene3D:1.10.20.10GeneID:834818
Genevisible:Q84W66GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009738GO:GO:0033613GO:GO:0043565
GO:GO:0045893hmmpanther:PTHR11064hmmpanther:PTHR11064:SF20HOGENOM:HOG000211832
InParanoid:Q84W66IntAct:Q84W66InterPro:IPR003956InterPro:IPR003958
InterPro:IPR009072KEGG:ath:AT5G47670OMA:HYRHQNGPaxDb:Q84W66
Pfam:PF00808Pfam:Q84W66PhylomeDB:Q84W66PRIDE:Q84W66
PRO:PR:Q84W66PROSITE:PS00685ProteinModelPortal:Q84W66Proteomes:UP000006548
Reactome:R-ATH-2426168RefSeq:NP_001078727.1RefSeq:NP_199578.2scanprosite:PS00685
SMR:Q84W66STRING:3702.AT5G47670.1SUPFAM:SSF47113TAIR:AT5G47670
tair10-symbols:L1Ltair10-symbols:NF-YB6UniGene:At.29883UniGene:At.49140
UniProt:Q84W66
Coordinates (TAIR10) chr5:+:19315061..19315975
Molecular Weight (calculated) 26137.80 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.64
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)