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AT3G17980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.893
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G48590.2); Has 4930 Blast hits to 4266 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2771; Fungi - 648; Plants - 1093; Viruses - 0; Other Eukaryotes - 418 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1030EMBL:AB019230EMBL:BT021979
EMBL:BT030626EMBL:CP002686EnsemblPlants:AT3G17980EnsemblPlants:AT3G17980.1
entrez:821323Gene3D:2.60.40.150GeneID:821323Genevisible:Q9LVH4
GO:GO:0005096GO:GO:0005543GO:GO:0005634GO:GO:0005829
GO:GO:0005886GO:GO:0006952GO:GO:0009651GO:GO:0009738
GO:GO:0009789GO:GO:0043547GO:GO:0046872GO:GO:1901002
GO:GO:1902479Gramene:AT3G17980.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF290
HOGENOM:HOG000238659InParanoid:Q9LVH4InterPro:IPR000008KEGG:ath:AT3G17980
OMA:ITRIQPCPaxDb:Q9LVH4PDB:4V29PDB:5A4X
PDB:5A50PDB:5A51PDBsum:4V29PDBsum:5A4X
PDBsum:5A50PDBsum:5A51Pfam:PF00168Pfscan:PS50004
PhylomeDB:Q9LVH4PRIDE:Q9LVH4PRO:PR:Q9LVH4PROSITE:PS50004
ProteinModelPortal:Q9LVH4Proteomes:UP000006548RefSeq:NP_188425.2SMART:SM00239
SMR:Q9LVH4STRING:3702.AT3G17980.1SUPFAM:SSF49562TAIR:AT3G17980
UniGene:At.8044UniProt:Q9LVH4
Coordinates (TAIR10) chr3:+:6152417..6153115
Molecular Weight (calculated) 19901.20 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.23
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTACPARTS SLMDDLLGLL RIRIKRGVNL AVRDISSSDP YVVVKMGKQK LKTRVINKDV NPEWNEDLTL SVTDSNLTVL LTVYDHDMFS KDDKMGDAEF
101: EIKPYIEALR MQLDGLPSGT IVTTVKPSRR NCLAEESRVT WVDGKLVQDL VLRLRHVECG EVEAQLQWID LPGSKGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)