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AT1G54070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dormancy/auxin associated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G56220.3); Has 172 Blast hits to 172 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2T3eggNOG:ENOG410YNP6EMBL:AC006577EMBL:CP002684
EnsemblPlants:AT1G54070EnsemblPlants:AT1G54070.1entrez:841845GeneID:841845
Gramene:AT1G54070.1hmmpanther:PTHR33565hmmpanther:PTHR33565:SF3HOGENOM:HOG000272707
InParanoid:F4HV65InterPro:IPR008406KEGG:ath:AT1G54070OMA:TRSIMVT
PaxDb:F4HV65PaxDb:Q9SYG3Pfam:PF05564PIR:D96581
PRIDE:F4HV65Proteomes:UP000006548RefSeq:NP_175809.1TAIR:AT1G54070
UniGene:At.37286UniProt:F4HV65
Coordinates (TAIR10) chr1:+:20182683..20183242
Molecular Weight (calculated) 13100.50 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.49
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLHKLWDE TVAGPTPDNG LGKLRKHDSL STVRSSPPSL SSDQVTRSIM VTKGNNNVRG LRKLKMDPDS PTCSSSNPGT PLTPGTPCYA LGPFTAGKIP
101: SSGEDDAASL TTYEWIVINA LDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)