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AT1G29140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G18596.1); Has 312 Blast hits to 312 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0BFeggNOG:ENOG410ZND9EMBL:AC021043EMBL:CP002684
EnsemblPlants:AT1G29140EnsemblPlants:AT1G29140.1entrez:839788GeneID:839788
GO:GO:0048046Gramene:AT1G29140.1hmmpanther:PTHR31614hmmpanther:PTHR31614:SF2
HOGENOM:HOG000240768InterPro:IPR006041KEGG:ath:AT1G29140OMA:DHEKELC
PANTHER:PTHR31614:SF2Pfam:PF01190PhylomeDB:Q9LP44PIR:H86413
Proteomes:UP000006548RefSeq:NP_174209.1STRING:3702.AT1G29140.1TAIR:AT1G29140
TMHMM:TMhelixUniGene:At.40798UniProt:Q9LP44
Coordinates (TAIR10) chr1:+:10179029..10179811
Molecular Weight (calculated) 19095.80 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.07
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKFFIVFLA SALCFTTLVH FTAADADDFD KFHIKGSVYC DTCRVQFITR ISKFLEGAKV KLECKGRENQ TVTLTKEAVT DNAGNYQMEV MGDHEEEVCE
101: IVLLQSPDPE CGDVNNQEFL RNAARISLTA NDGIVSNETR TINPLGFMRK TPLAECPQVF KELGIVPDVT F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)