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AT3G13390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKU5 similar 11 (sks11); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 12 (TAIR:AT1G55570.1); Has 5403 Blast hits to 5363 proteins in 1022 species: Archae - 18; Bacteria - 1817; Metazoa - 269; Fungi - 1904; Plants - 1258; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13390-MONOMEReggNOG:COG2132eggNOG:KOG1263EMBL:AP000603
EMBL:BT003958EMBL:BT005058EMBL:CP002686EnsemblPlants:AT3G13390
EnsemblPlants:AT3G13390.1entrez:820539Gene3D:2.60.40.420GeneID:820539
GO:GO:0005507GO:GO:0009505GO:GO:0009506GO:GO:0016722
Gramene:AT3G13390.1gramene_pathway:1.10.3.3gramene_pathway:PWY-2261hmmpanther:PTHR11709
hmmpanther:PTHR11709:SF27HOGENOM:HOG000241637InterPro:IPR001117InterPro:IPR008972
InterPro:IPR011706InterPro:IPR011707KEGG:ath:AT3G13390OMA:DSINVRM
Pfam:PF00394Pfam:PF07731Pfam:PF07732PhylomeDB:Q9LJF2
Proteomes:UP000006548RefSeq:NP_187947.1SMR:Q9LJF2STRING:3702.AT3G13390.1
SUPFAM:SSF49503TAIR:AT3G13390tair10-symbols:sks11UniGene:At.39426
UniProt:Q9LJF2
Coordinates (TAIR10) chr3:-:4351401..4353289
Molecular Weight (calculated) 61950.80 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.38
Length 554 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGVKLLAAC LYLAAAATVV VRAEDPYFHH VWNVTYGTVS PLGVPQQVIL INGQFPGPNV NSTSNNNVII NVFNNLDEPF LLTWNGIQHR KNCWQDGTPG
101: TMCPIMPGTN YTYHFQPKDQ IGSYFYYPST AMHRSAGGFG GLRVNSRLLI PVPYADPEDD YTVLIGDWYT KSHTQLKKFL DSGRTLGRPD GILINGKSGK
201: GDGSDAPLFT LKPGKTYRVR ICNVGLKTSL NFRIQNHKLK LVEMEGSHVL QNDYDSLDVH VGQCYGTILT ANQEAKDYYM VASSRFLKSV ITTTGLLRYE
301: GGKGPASSQL PPGPVGWAWS LNQFRSFRWN LTASAARPNP QGSYHYGKIN ITRTIKLVNT QGKVDGKLRY ALNGVSHTDP ETPLKLAEYF GVADKVFKYD
401: SITDNPTPEQ IKSIKIVPNV LNITHRTFIE VVFENHEKSV QSWHLDGYSF FAVAVEPGTW TPEKRKNYNL LDAVSRHTVQ VYPKCWAAIL LTFDNCGMWN
501: VRSENSERRY LGQQLYASVL SPEKSLRDEY NMPETSLQCG LVKGTPKPNP YAGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)