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AT5G48140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48140-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IVDY
EMBL:AB023039EMBL:AK118684EMBL:BT009687EMBL:CP002688
EnsemblPlants:AT5G48140EnsemblPlants:AT5G48140.1entrez:834866Gene3D:2.160.20.10
GeneID:834866GO:GO:0004650GO:GO:0005576GO:GO:0005975
GO:GO:0071555Gramene:AT5G48140.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF37
HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT5G48140OMA:CKAPIRIPfam:PF00295
PhylomeDB:Q9LUB8PROSITE:PS00502Proteomes:UP000006548RefSeq:NP_199625.1
scanprosite:PS00502SMART:SM00710SMR:Q9LUB8STRING:3702.AT5G48140.1
SUPFAM:SSF51126TAIR:AT5G48140UniGene:At.7075UniProt:Q9LUB8
Coordinates (TAIR10) chr5:-:19518907..19520412
Molecular Weight (calculated) 42522.30 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.13
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVHFGVSA FFVFCLLGLS ANAKIFNINS PPGSDITNAL LKAFNEACQF PTKSTVMIPK GEYKLGEIVM MGPCKAPIRI ALLGTVKADG NANGKEKWVA
101: FRNINGFKLN GGGVFDGEGN AAWRVNNCHK TFNCKKLPIS IRFDFVTDAK IRGITSLDAK HFHINVIGAK NVTFEDVKII APAESPNTDG IHVGRSDGIK
201: IINSFISTGD DCVSVGDGMK NLLVERVTCG PGHGISIGSL GRYSHEENVS GIKIINCTLQ ETDNGLRIKT WPSAACTTTA SDIHFENILL KNVSNPILID
301: QEYCPWNQCN KQKPSTIKLA NISFKKIRGT SGNKDAVKLL CSKGYPCQNV EVGDVNIQYT GADGPATFQC SNVSPKLVGT QIPKACSSPV TKPPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)