suba logo
AT4G27790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.539
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT5G08580.1); Has 4096 Blast hits to 3931 proteins in 669 species: Archae - 0; Bacteria - 5; Metazoa - 1396; Fungi - 738; Plants - 1509; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRVEeggNOG:KOG4223EMBL:AL078579EMBL:AL161571
EMBL:CP002687EnsemblPlants:AT4G27790EnsemblPlants:AT4G27790.1entrez:828892
Gene3D:1.10.238.10GeneID:828892GO:GO:0005509Gramene:AT4G27790.1
hmmpanther:PTHR10827hmmpanther:PTHR10827:SF54HOGENOM:HOG000237981InterPro:IPR002048
InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT4G27790ncoils:Coil
OMA:FYSTVYDPfam:PF13202Pfam:PF13499Pfscan:PS50222
PhylomeDB:Q9STP7PIR:T09018PROSITE:PS00018PROSITE:PS50222
Proteomes:UP000006548RefSeq:NP_194508.1scanprosite:PS00018SMART:SM00054
SMR:Q9STP7SUPFAM:SSF47473TAIR:AT4G27790TMHMM:TMhelix
UniGene:At.50371UniProt:Q9STP7
Coordinates (TAIR10) chr4:+:13850066..13851488
Molecular Weight (calculated) 40915.10 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.80
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKVVVYTIL TATIIFLILL AHKKQNQTQS IEGLITRRIG RRLEMPVFDP LVTRIERLSH EKEAGTKTVE AAKEEKDDMF EEYFAQERRL NTTMRIKFLF
101: PLLDASPRDG FVSLKELQTW MMQQTEDNMV YRTAKELELQ DKDKDGVITF EEYLPQFSKQ DIEKNEKGHG EAGWWMEQFK NSDFDHNGSL DIEEFNNFLH
201: PEDSRNGDTQ RWVLKERMTG MDTNGDGKLE YKEFVKNAYE MYKEFAKFEK EEDENVPTPQ LLFAEMDRDK DRFLVADELR PILQYLQPGE MSYAKFYSTF
301: LCHEADEDKD GKLSLEEMLH HEDVFYKAVH HEDLDDEDYF DHDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)