suba logo
AT5G22810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT5G03820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G22810-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IVKC
EMBL:AB005243EMBL:CP002688EnsemblPlants:AT5G22810EnsemblPlants:AT5G22810.1
entrez:832344Gene3D:3.40.50.1110GeneID:832344Genevisible:Q9FFC6
GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT5G22810.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF191HOGENOM:HOG000237650InParanoid:Q9FFC6
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT5G22810PaxDb:Q9FFC6
Pfam:PF00657Pfam:Q9FFC6PRIDE:Q9FFC6PRO:PR:Q9FFC6
ProteinModelPortal:Q9FFC6Proteomes:UP000006548RefSeq:NP_197672.1SMR:Q9FFC6
SUPFAM:SSF52266TAIR:AT5G22810UniGene:At.31041UniProt:Q9FFC6
Coordinates (TAIR10) chr5:+:7621568..7623367
Molecular Weight (calculated) 36664.50 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.04
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVMKAQPLV PAIFIFGDSV VDVGNNNDIY TIVKANFPPY GRDFTTHTPT GRFCNGKLAT DFTAENLGFK SYPQAYLSKK AKGKNLLIGA NFASAASGYY
101: DGTAKLYSAI SLPQQLEHYK DYISRIQEIA TSNNNSNASA IISNGIYIVS AGSSDFIQNY YINPLLYRDQ SPDEFSDLLI LSYSSFIQNL YSLGARRIGV
201: TTLPPLGCLP AAITVVGPHE GGCSEKLNND AISFNNKLNT TSQDLKRNLI GLNLVVFDIY QPLYDLATRP SEFGFAEARR ACCGTGLLET SILCNPKSVG
301: TCNNATEYVF WDGFHPTEAA NKILADNLLV SGISLIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)