suba logo
AT3G60670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT2G12646.1); Has 407 Blast hits to 407 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 407; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJE2eggNOG:ENOG410Y9HAEMBL:AL162295EMBL:BT020234
EMBL:BT020501EMBL:CP002686EnsemblPlants:AT3G60670EnsemblPlants:AT3G60670.1
entrez:825238GeneID:825238Gramene:AT3G60670.1hmmpanther:PTHR31065
hmmpanther:PTHR31065:SF1HOGENOM:HOG000235045InterPro:IPR006734KEGG:ath:AT3G60670
OMA:EKNIYCLPfam:PF04640PhylomeDB:Q9LZZ6PIR:T47878
Proteomes:UP000006548RefSeq:NP_191626.1TAIR:AT3G60670UniGene:At.50297
UniProt:Q9LZZ6
Coordinates (TAIR10) chr3:-:22424695..22426074
Molecular Weight (calculated) 27746.10 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.38
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)