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AT2G37060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B8 (NF-YB8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B10 (TAIR:AT3G53340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:3626eggNOG:COG2036eggNOG:KOG0869EMBL:AC006260
EMBL:AY070477EMBL:AY091673EMBL:CP002685EnsemblPlants:AT2G37060
EnsemblPlants:AT2G37060.1EnsemblPlants:AT2G37060.2EnsemblPlants:AT2G37060.3entrez:818282
Gene3D:1.10.20.10GeneID:818282Genevisible:Q8VYK4GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0043565Gramene:AT2G37060.1
Gramene:AT2G37060.2Gramene:AT2G37060.3hmmpanther:PTHR11064hmmpanther:PTHR11064:SF45
HOGENOM:HOG000211832InParanoid:Q8VYK4InterPro:IPR003956InterPro:IPR003958
InterPro:IPR009072KEGG:ath:AT2G37060OMA:NAKKDGQPaxDb:Q8VYK4
Pfam:PF00808Pfam:Q8VYK4PhylomeDB:Q8VYK4PIR:A84788
PRIDE:Q8VYK4PRO:PR:Q8VYK4PROSITE:PS00685ProteinModelPortal:Q8VYK4
Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_001031500.1RefSeq:NP_850277.2
RefSeq:NP_973617.1scanprosite:PS00685SMR:Q8VYK4STRING:3702.AT2G37060.1
SUPFAM:SSF47113TAIR:AT2G37060tair10-symbols:NF-YB8UniGene:At.28391
UniProt:Q8VYK4
Coordinates (TAIR10) chr2:+:15576336..15577660
Molecular Weight (calculated) 18999.40 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.82
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)