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AT3G53340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B10 (NF-YB10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B8 (TAIR:AT2G37060.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:9819eggNOG:COG2036eggNOG:KOG0869EMBL:AK176827
EMBL:AL132966EMBL:CP002686EnsemblPlants:AT3G53340EnsemblPlants:AT3G53340.1
entrez:824502Gene3D:1.10.20.10GeneID:824502Genevisible:Q67XJ2
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0043565
Gramene:AT3G53340.1hmmpanther:PTHR11064hmmpanther:PTHR11064:SF27HOGENOM:HOG000211832
InParanoid:Q67XJ2IntAct:Q67XJ2InterPro:IPR003956InterPro:IPR003958
InterPro:IPR009072KEGG:ath:AT3G53340OMA:MKRGLPLPaxDb:Q67XJ2
Pfam:PF00808Pfam:Q67XJ2PhylomeDB:Q67XJ2PIR:T45874
PRIDE:Q67XJ2PRO:PR:Q67XJ2PROSITE:PS00685ProteinModelPortal:Q67XJ2
Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_190902.2scanprosite:PS00685
SMR:Q67XJ2STRING:3702.AT3G53340.1SUPFAM:SSF47113TAIR:AT3G53340
tair10-symbols:NF-YB10UniGene:At.35203UniProt:Q67XJ2
Coordinates (TAIR10) chr3:-:19774667..19775991
Molecular Weight (calculated) 19156.50 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.81
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN GKIAKDAKET MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)