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AT3G49940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LOB domain-containing protein 38
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 38 (LBD38); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 37 (TAIR:AT5G67420.1); Has 581 Blast hits to 580 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:9474eggNOG:ENOG410IIDWeggNOG:ENOG4111JGSEMBL:AB473873
EMBL:AL132978EMBL:AY085761EMBL:BT002449EMBL:BT006287
EMBL:CP002686EnsemblPlants:AT3G49940EnsemblPlants:AT3G49940.1entrez:824156
GeneID:824156Genevisible:Q9SN23Gramene:AT3G49940.1hmmpanther:PTHR31304
hmmpanther:PTHR31304:SF6HOGENOM:HOG000237458InParanoid:Q9SN23InterPro:IPR004883
iPTMnet:Q9SN23KEGG:ath:AT3G49940OMA:IQWIESPPaxDb:Q9SN23
Pfam:PF03195Pfam:Q9SN23Pfscan:PS50891PhylomeDB:Q9SN23
PIR:T45847PRIDE:Q9SN23PRO:PR:Q9SN23PROSITE:PS50891
Proteomes:UP000006548RefSeq:NP_190563.1STRING:3702.AT3G49940.1TAIR:AT3G49940
tair10-symbols:LBD38UniGene:At.27456UniGene:At.43135UniProt:Q9SN23
Coordinates (TAIR10) chr3:+:18514465..18515302
Molecular Weight (calculated) 26723.70 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.26
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)