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AT1G63840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41400.1); Has 7174 Blast hits to 7158 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 1914; Fungi - 486; Plants - 3881; Viruses - 16; Other Eukaryotes - 877 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1837-MONOMEReggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC010852
EMBL:AK227440EMBL:AY058131EMBL:BT010153EMBL:CP002684
EnsemblPlants:AT1G63840EnsemblPlants:AT1G63840.1entrez:842687Gene3D:3.30.40.10
GeneID:842687GO:GO:0008270GO:GO:0009737GO:GO:0016021
Gramene:AT1G63840.1hmmpanther:PTHR14155HOGENOM:HOG000239353InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT1G63840OMA:FLEPEMSPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9CAJ8PIR:E96663PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_176569.1SMART:SM00184SMR:Q9CAJ8
STRING:3702.AT1G63840.1SUPFAM:SSF57850TAIR:AT1G63840TMHMM:TMhelix
UniGene:At.21224UniGene:At.67559UniProt:Q9CAJ8
Coordinates (TAIR10) chr1:-:23689991..23690491
Molecular Weight (calculated) 19057.10 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.04
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFPVGYSEL LLPKIFFYLL SFLGLIRKLI STMFKIIGLP DFLEPEPVST SWPDPPPTLT KPDSAAILAG EMLPVVRFSD INRPESECCA VCLYDFENDD
101: EIRRLTNCRH IFHRGCLDRW MMGYNQMTCP LCRTQFIPDH LQLEFNQRLW SQSSAVSSQL LDESSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)