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AT3G13310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.900
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G17880.1); Has 19059 Blast hits to 19056 proteins in 3143 species: Archae - 142; Bacteria - 8678; Metazoa - 3049; Fungi - 1540; Plants - 1805; Viruses - 5; Other Eukaryotes - 3840 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:ENOG410IQSREMBL:AB024034EMBL:AY087071
EMBL:BT009709EMBL:CP002686EnsemblPlants:AT3G13310EnsemblPlants:AT3G13310.1
entrez:820531Gene3D:1.10.287.110GeneID:820531GO:GO:0009507
Gramene:AT3G13310.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF284HOGENOM:HOG000283406
IntAct:Q9LTT7InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT3G13310
OMA:YSGTARFPfam:PF00226Pfscan:PS50076PhylomeDB:Q9LTT7
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_187939.1scanprosite:PS00636SMART:SM00271SMR:Q9LTT7
STRING:3702.AT3G13310.1SUPFAM:SSF46565TAIR:AT3G13310UniGene:At.23684
UniGene:At.39438UniProt:Q9LTT7
Coordinates (TAIR10) chr3:-:4310827..4311300
Molecular Weight (calculated) 17450.60 Da
IEP (calculated) 10.37
GRAVY (calculated) -0.52
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)