suba logo
AT2G16720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 7
Curator
Summary (TAIR10)
Encodes a member of MYB3R- and R2R3- type MYB- encoding genes
Computational
Description (TAIR10)
myb domain protein 7 (MYB7); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9129 Blast hits to 8417 proteins in 488 species: Archae - 0; Bacteria - 0; Metazoa - 770; Fungi - 477; Plants - 6097; Viruses - 3; Other Eukaryotes - 1782 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC005825EMBL:AY519573
EMBL:CP002685EMBL:U26937EMBL:X90385EnsemblPlants:AT2G16720
EnsemblPlants:AT2G16720.1entrez:816173Gene3D:1.10.10.60GeneID:816173
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009651
GO:GO:0009751GO:GO:1900384Gramene:AT2G16720.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF588HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT2G16720KO:K09422OMA:VCKEERV
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q42379PIR:S58292
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_179263.1SMART:SM00717
SMR:Q42379STRING:3702.AT2G16720.1SUPFAM:SSF46689TAIR:AT2G16720
tair10-symbols:ATMYB7tair10-symbols:ATY49tair10-symbols:MYB7UniGene:At.5349
UniProt:Q42379
Coordinates (TAIR10) chr2:-:7255669..7256550
Molecular Weight (calculated) 31011.00 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.75
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)