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AT2G16790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.491
cytosol 0.441
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 2254 Blast hits to 2254 proteins in 918 species: Archae - 9; Bacteria - 1822; Metazoa - 57; Fungi - 155; Plants - 35; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16790-MONOMEREC:2.7.1.12eggNOG:COG3265eggNOG:KOG3354
EMBL:AC005825EMBL:CP002685EnsemblPlants:AT2G16790EnsemblPlants:AT2G16790.1
entrez:816180ExpressionAtlas:Q9SLE0Gene3D:3.40.50.300GeneID:816180
GO:GO:0005975GO:GO:0016301Gramene:AT2G16790.1hmmpanther:PTHR11603
InterPro:IPR006001InterPro:IPR027417InterPro:IPR031322KEGG:00030+2.7.1.12
KEGG:00400+2.7.1.71OMA:MGVCASGPfam:PF01202PhylomeDB:Q9SLE0
PIR:C84544Proteomes:UP000006548RefSeq:NP_565393.1SMR:Q9SLE0
STRING:3702.AT2G16790.1SUPFAM:SSF52540TAIR:AT2G16790TIGRfam:TIGR01313
TIGRFAMs:TIGR01313UniGene:At.40236unipathway:UPA00053UniPathway:UPA00792
UniProt:Q9SLE0
Coordinates (TAIR10) chr2:-:7284093..7284901
Molecular Weight (calculated) 20970.40 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.15
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAKNDVTGK VIAIMGVSGA GKSTIGKMLG KALSCDFLDA DDFHSLSNRD KMRQGIALSD EDRMPWLEKI QESLRKRLLD GETVVLACSS LRKQYREILR
101: GSDPDYKPGS YTSCKVTFVL LEGNAEVIAA RLQKRASEEE HFMPLTLLQS QFDLLQADEC EKIFKISVVL SPEVIVNTIL EMVANSLNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)