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AT4G35060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 6 (TAIR:AT4G38580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:829658eggNOG:COG2608eggNOG:KOG1603EMBL:AK229060
EMBL:AL022023EMBL:AL161586EMBL:AY086639EMBL:BT024822
EMBL:CP002687EnsemblPlants:AT4G35060EnsemblPlants:AT4G35060.1entrez:829658
GeneID:829658GO:GO:0005737GO:GO:0009506GO:GO:0016020
GO:GO:0030001GO:GO:0046872GO:GO:0046914GO:GO:0046916
Gramene:AT4G35060.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF155HOGENOM:HOG000234967
InterPro:IPR006121iPTMnet:O49613KEGG:ath:AT4G35060OMA:LYPFVPY
PaxDb:O49613Pfam:PF00403Pfscan:PS50846PhylomeDB:O49613
PIR:T05776PROSITE:PS50846ProteinModelPortal:O49613Proteomes:UP000006548
RefSeq:NP_567975.1SMR:O49613STRING:3702.AT4G35060.1SUPFAM:SSF55008
SwissPalm:O49613TAIR:AT4G35060tair10-symbols:HIPP25UniGene:At.31450
UniProt:O49613
Coordinates (TAIR10) chr4:-:16685874..16686419
Molecular Weight (calculated) 17163.30 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.39
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVLDHVSEY FDCSHGSSKR HKSLQTVDVR VLIDCEGCER KVRRALEGMR GIRDVTIEPN AQKVTVVGYV EPNKVVARII HRTGKRAELY PFVPYDVVAH
101: PYASGVYDNR APTGYVRNTE YDPHVSRLAR ASSTEVRYTT AFSDENASAC VVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)