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AT5G42250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42250-MONOMEREC:1.1.1.1eggNOG:COG1062eggNOG:KOG0022
EMBL:AB023032EMBL:AY081332EMBL:AY128827EMBL:CP002688
EnsemblPlants:AT5G42250EnsemblPlants:AT5G42250.1entrez:834230Gene3D:3.40.50.720
Gene3D:3.90.180.10GeneID:834230Genevisible:Q9FH04GO:GO:0004022
GO:GO:0005737GO:GO:0008270Gramene:AT5G42250.1gramene_pathway:1.1.1.1
gramene_pathway:1.1.1.22gramene_pathway:ETOH-ACETYLCOA-ANA-PWYgramene_pathway:PWY-3801gramene_pathway:PWY-3821
gramene_pathway:PWY-4821gramene_pathway:PWY-5486gramene_pathway:PWY-6333gramene_pathway:PWY66-21
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF492HOGENOM:HOG000294674InParanoid:Q9FH04
InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149
InterPro:IPR013154InterPro:IPR016040KEGG:ath:AT5G42250KO:K00121
OMA:KFVTHEMPANTHER:PTHR11695PaxDb:Q9FH04Pfam:PF00107
Pfam:PF08240Pfam:Q9FH04PhylomeDB:Q9FH04PRIDE:Q9FH04
PRO:PR:Q9FH04PROSITE:PS00059ProteinModelPortal:Q9FH04Proteomes:UP000006548
RefSeq:NP_199040.1scanprosite:PS00059SMR:Q9FH04STRING:3702.AT5G42250.1
SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT5G42250UniGene:At.43887
UniProt:Q9FH04
Coordinates (TAIR10) chr5:+:16894087..16897450
Molecular Weight (calculated) 42570.50 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.04
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGNSSSDN KSSHKPIRCK AAVSRKAGEP LVMEEIMVAP PQPFEVRIRI ICTALCHSDV TFWKLQVPPA CFPRILGHEA IGVVESVGEN VKEVVEGDTV
101: LPTFMPDCGD CVDCKSHKSN LCSKFPFKVS PWMPRYDNSS RFTDLNGETL FHFLNVSSFS EYTVLDVANV VKIDSSIPPS RACLLSCGVS TGVGAAWETA
201: KVEKGSTVVI FGLGSIGLAV AEGARLCGAS RIIGVDINPT KFQVGQKFGV TEFVNSMTCE KNRVSEVINE MTDGGADYCF ECVGSSSLVQ EAYACCRQGW
301: GKTITLGVDK PGSQICLDSF DVLHHGKILM GSLFGGLKAK THIPILLKRY LSNELELDKF VTHEMKFEEI NDAFQLLLEG KCIRCVLWMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)