AT4G23270.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a cysteine-rich receptor-like protein kinase. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (CRK19); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, defense response to bacterium, response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (TAIR:AT4G23280.1); Has 120138 Blast hits to 118523 proteins in 4474 species: Archae - 103; Bacteria - 13354; Metazoa - 44588; Fungi - 10215; Plants - 33864; Viruses - 408; Other Eukaryotes - 17606 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:12171133..12173794 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 71623.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 645 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSLISFIFL FLFSSITASA QNTFYLYHNC SVTTTFSSNS TYSTNLKTLL SSLSSLNASS YSTGFQTATA GQAPDRVTGL FLCRVDVSSE VCRSCVTFAV 101: NETLTRCPKD KEGVFYYEQC LLRYSNRNIV ATLNTDGGMF MQSARNPLSV KQDQFRDLVL TPMNLAAVEA ARSFKKWAVR KIDLNASQSL YGMVRCTPDL 201: REQDCLDCLK IGINQVTYDK IGGRILLPSC ASRYDNYAFY NESNVGTPQD SSPRPGKGGN SSVIIIAVVV PITVLFLLLV AVFSVRAKNK RTLNEKEPVA 301: EDGNDITTAG SLQFDFKAIE AATNCFLPIN KLGQGGFGEV YKGTLSSGLQ VAVKRLSKTS GQGEKEFENE VVVVAKLQHR NLVKLLGYCL EGEEKILVYE 401: FVPNKSLDHF LFDSTMKMKL DWTRRYKIIG GIARGILYLH QDSRLTIIHR DLKAGNILLD DDMNPKIADF GMARIFGMDQ TEAMTRRVVG TYGYMSPEYA 501: MYGQFSMKSD VYSFGVLVLE IISGMKNSSL YQMDESVGNL VTYTWRLWSN GSPSELVDPS FGDNYQTSEI TRCIHIALLC VQEDAEDRPT MSSIVQMLTT 601: SLIALAEPRP PGFFFRSKQE QAGPSIDSST HCSVDEASIT RVTPR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)