AT2G22180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.733 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G39745.1); Has 202 Blast hits to 201 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 3; Plants - 182; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9428969..9429844 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32207.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||
| Length | 291 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGPRRPPSA TAPDSDDDKP DDPPSVWHRP TSSLPALPSL DPPSHGSHHW RNHSLNLSPL PTTSSPPLPP PDSIPELETY VVQVPRDQVY WTPPPEHAKY 101: VEKRSKNPEK NKKKGCSKRL LWFFIILVIF GFLLGAIILI LHFAFNPTLP VFAVERLTVN PSNFEVTLRA ENPTSNMGVR YMMEKNGVVS LTYKNKSLGS 201: GKFPGLSQAA SGSDKVNVKL NGSTKNAVVQ PRGSKQPVVL MLNMELKAEY EAGPVKRNKE VVVTCDVKVK GLLDAKKVEI VSENCESEFK N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)