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AT2G22180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.733
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G39745.1); Has 202 Blast hits to 201 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 3; Plants - 182; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEGUeggNOG:ENOG410YXEEEMBL:AC007168EMBL:CP002685
EMBL:DQ446547EnsemblPlants:AT2G22180EnsemblPlants:AT2G22180.1entrez:816752
GeneID:816752GO:GO:0016021Gramene:AT2G22180.1hmmpanther:PTHR31852
hmmpanther:PTHR31852:SF47KEGG:ath:AT2G22180OMA:NPTSNMGPhylomeDB:Q9SIE6
PIR:H84609Proteomes:UP000006548RefSeq:NP_179808.1STRING:3702.AT2G22180.1
TAIR:AT2G22180TMHMM:TMhelixUniGene:At.49351UniProt:Q9SIE6
Coordinates (TAIR10) chr2:+:9428969..9429844
Molecular Weight (calculated) 32207.70 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.45
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGPRRPPSA TAPDSDDDKP DDPPSVWHRP TSSLPALPSL DPPSHGSHHW RNHSLNLSPL PTTSSPPLPP PDSIPELETY VVQVPRDQVY WTPPPEHAKY
101: VEKRSKNPEK NKKKGCSKRL LWFFIILVIF GFLLGAIILI LHFAFNPTLP VFAVERLTVN PSNFEVTLRA ENPTSNMGVR YMMEKNGVVS LTYKNKSLGS
201: GKFPGLSQAA SGSDKVNVKL NGSTKNAVVQ PRGSKQPVVL MLNMELKAEY EAGPVKRNKE VVVTCDVKVK GLLDAKKVEI VSENCESEFK N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)