AT4G23260.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a cysteine-rich receptor-like protein kinase. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (CRK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: kinases;protein kinases (TAIR:AT4G23250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:12167528..12170055 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72772.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATKSCELVL CFFVFFVISF SAISVSAQTC DNTTGTFIPN SPYDKNRRLI LSTLASNVTA QEGYFIGSIG IAPDQVFATG MCAPGSERDV CSLCIRSTSE 101: SLLQSCLDQA DAFFWSGEET LCLVRYANRP FSGLLVMDPL GAIFNTGELN TNQTVFDIEW NNLTSSMIAG ITSSSSGGNN SSKYYSDDIA LVPDFKNISA 201: LMQCTPDVSS EDCNTCLRQN VVDYDNCCRG HQGGVMSRPN CFFRWEVYPF SGAIDQINLP KSPPPSVTSP SPIANITKNG NRISGGKIAA IVVVTVVTII 301: LVVLGFVISN RRKQKQEMDL PTESVQFDLK TIESATSNFS ERNKLGKGGF GEVYKGMLMN GTEIAVKRLS KTSGQGEVEF KNEVVVVAKL QHINLVRLLG 401: FSLQGEEKLL VYEFVSNKSL DYFLFDPTKR NQLDWTMRRN IIGGITRGIL YLHQDSRLKI IHRDLKASNI LLDADMNPKI ADFGMARIFG VDQTVANTGR 501: VVGTFGYMSP EYVTHGQFSM KSDVYSFGVL ILEIISGKKN SSFYQMDGLV NNLVTYVWKL WENKSLHELL DPFINQDFTS EEVIRYIHIG LLCVQENPAD 601: RPTMSTIHQM LTNSSITLPV PLPPGFFFRN GPGSNPGQSN SKSFACSVDE ATITDVNPR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)