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AT2G37540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.917
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: pollen tube growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G02540.1); Has 68340 Blast hits to 68248 proteins in 3185 species: Archae - 570; Bacteria - 45342; Metazoa - 4477; Fungi - 4309; Plants - 2410; Viruses - 0; Other Eukaryotes - 11232 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G37540-MONOMEReggNOG:COG1028eggNOG:KOG1208EMBL:AC004684
EMBL:AY099558EMBL:BT001244EMBL:CP002685EnsemblPlants:AT2G37540
EnsemblPlants:AT2G37540.1entrez:818330Gene3D:3.40.50.720GeneID:818330
GO:GO:0009860GO:GO:0016491Gramene:AT2G37540.1hmmpanther:PTHR24320
hmmpanther:PTHR24320:SF68InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT2G37540
OMA:YSERRAYPfam:PF00106PhylomeDB:O80924PIR:T02520
PRINTS:PR00080PRINTS:PR00081Proteomes:UP000006548Reactome:R-ATH-2453902
Reactome:R-ATH-5365859RefSeq:NP_181290.1SMR:O80924STRING:3702.AT2G37540.1
SUPFAM:SSF51735TAIR:AT2G37540UniGene:At.43675UniGene:At.66330
UniProt:O80924
Coordinates (TAIR10) chr2:-:15751695..15753820
Molecular Weight (calculated) 34886.00 Da
IEP (calculated) 9.26
GRAVY (calculated) 0.01
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIYGVMTGK KGKSGFGSAS TAEDVTQAID ASHLTAIITG GTSGIGLEAA RVLAMRGAHV IIAARNPKAA NESKEMILQM NPNARVDYLQ IDVSSIKSVR
101: SFVDQFLALN VPLNILINNA GVMFCPFKLT EDGIESQFAT NHIGHFLLTN LLLDKMKSTA RESGVQGRIV NLSSIAHTYT YSEGIKFQGI NDPAGYSERR
201: AYGQSKLSNL LHSNALSRRL QEEGVNITIN SVHPGLVTTN LFRYSGFSMK VFRAMTFLFW KNIPQGAATT CYVALHPDLE GVTGKYFGDC NIVAPSKFAT
301: NNSLADKLWD FSVFLIDSIS K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)