AT1G12450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNARE associated Golgi protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1); Has 1732 Blast hits to 1729 proteins in 535 species: Archae - 6; Bacteria - 860; Metazoa - 122; Fungi - 106; Plants - 250; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4244496..4245808 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33304.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.54 | ||||||||||||||||||||||||||||
| Length | 303 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTYSNGVDGT VPELKLRVEE DSDNGDYLKL RGGSNEEDEG SSAESSRCPI GSVTSVWFWV KLISLVVCLG SLAFVIIKWV GPFLIEKELI PFINWVRNTF 101: SIPVLGLLLF ASVALFPSIL LPSSPSMWMA GLTFGYGKGF LLILSAASIG VTLPFLIGHL FLHKMQEWLK KYPKKAAILR AAGEGTWFHQ FQAVTLIRVS 201: PFPYIIYNYC ALATGVHYGP YILGSLVGMV PEIFVSIYTG IMLRTLAVAS DTRHTLSVVE IVVNVLGFCV TASATIVCTI YAKKKLSAMQ SEDVETLQNP 301: ILY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)