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AT2G29120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 2.7
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 2.7 (GLR2.7); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: vacuole; EXPRESSED IN: stem, cotyledon, leaf whorl, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.8 (TAIR:AT2G29110.1); Has 5217 Blast hits to 5121 proteins in 549 species: Archae - 76; Bacteria - 910; Metazoa - 3278; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Protein Annotations
BioGrid:2810eggNOG:ENOG410XQQVeggNOG:KOG1052EMBL:AC005315
EMBL:AY072069EMBL:AY080587EMBL:AY495450EMBL:CP002685
EnsemblPlants:AT2G29120EnsemblPlants:AT2G29120.1entrez:817460GeneID:817460
Genevisible:Q8LGN0GO:GO:0004970GO:GO:0005262GO:GO:0005773
GO:GO:0005886GO:GO:0006816GO:GO:0008066GO:GO:0016021
GO:GO:0019722GO:GO:0070588GO:GO:0071230Gramene:AT2G29120.1
hmmpanther:PTHR18966hmmpanther:PTHR18966:SF204HOGENOM:HOG000239558InParanoid:Q8LGN0
InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103
InterPro:IPR028082iPTMnet:Q8LGN0KEGG:ath:AT2G29120OMA:CLTSINI
PaxDb:Q8LGN0Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q8LGN0PhylomeDB:Q8LGN0PIR:T02742PIRSF:PIRSF037090
PRIDE:Q8LGN0PRO:PR:Q8LGN0ProteinModelPortal:Q8LGN0Proteomes:UP000006548
RefSeq:NP_180476.3SMART:SM00079SMR:Q8LGN0STRING:3702.AT2G29120.1
SUPFAM:SSF53822SUPFAM:SSF53850SUPFAM:SSF81324TAIR:AT2G29120
tair10-symbols:ATGLR2.7tair10-symbols:GLR2.7TMHMM:TMhelixUniGene:At.38520
UniProt:Q8LGN0
Coordinates (TAIR10) chr2:-:12511479..12515893
Molecular Weight (calculated) 107412.00 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.05
Length 952 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVMNPRKTN NTFMYYFVLF VCGFVLMEGC LGQNQTTEIK VGVVLDLHTS FSKLCLTSIN ISLSDFYKYH SDYTTRLAIH IRDSMEDVVQ ASSAALDLIK
101: NEQVSAIIGP RTSMQAEFMI RLADKSQVPT ITFSATCPLL TSINSPYFVR ATLDDSSQVK AIAAIVKSFG WRNVVAIYVD NEFGEGILPL LTDALQDVQA
201: FVVNRCLIPQ EANDDQILKE LYKLMTMQTR VFVVHMPPTL GFRFFQKARE IGMMEEGYVW LLTDGVMNLL KSNERGSSLE NMQGVLGVRS HIPKSKKLKN
301: FRLRWEKMFP KKGNDEEMNI FALRAYDSIT ALAMAVEKTN IKSLRYDHPI ASGNNKTNLG TLGVSRYGPS LLKALSNVRF NGLAGEFELI NGQLESSVFD
401: VINIIGSEER IIGLWRPSNG IVNAKSKNTT SVLGERLGPV IWPGKSKDVP KGWQIPTNGK MLRVGIPVKK GFLEFVDAKI DPISNAMTPT GYCIEIFEAV
501: LKKLPYSVIP KYIAFLSPDE NYDEMVYQVY TGAYDAVVGD VTIVANRSLY VDFTLPYTES GVSMMVPLKD NKNTWVFLRP WSLDLWVTTA CFFVFIGFIV
601: WILEHRVNTD FRGPPHHQIG TSFWFAFSTM NFAHREKVVS NLARFVVLVW CFVVLVLIQS YTANLTSFFT VKLLQPTVTN WKDLIKFNKN IGYQRGTFVR
701: ELLKSQGFDE SQLKPFGSAV ECDELFSNGT ITASFDEVAY IKVILSQNSS KYTMVEPSFK TAGFGFVFPK KSPLTDDVSR AILNVTQGEE MQHIENKWFK
801: KPNNCPDLNT SLSSNHLSLS SFWGLFLIAG IASFLALLIF VANFLYEHKH TLFDDSENSF RGKLKFLVRN FDEKDIKSHM FKENAVHNVS SPITQGSSSP
901: LTDQSTPLPR SPEQYRELEL RRVSSISSGE LFTTQSEQVE DEESAIIQCE GE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)