AT3G28540.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28510.1); Has 19094 Blast hits to 18394 proteins in 2794 species: Archae - 1114; Bacteria - 6721; Metazoa - 2744; Fungi - 2271; Plants - 2238; Viruses - 33; Other Eukaryotes - 3973 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:10694444..10695976 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59154.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFEAGGLFGF TGTTMASLMF FWSVYRQFVP YQIRDYLEKC FYKMFGLVSN SVHIKFTEYT EDKGLKKSQA YDLIRNYLSS KSTARAQRLK ANESKNSKSL 101: VLSLDNHEAV EDVFQGVKVV WSLSVWKSND QADSSEKRYL TLSFHNRYRE MITTTYLDHV LREGKEIGLK NRERKLYTNN SSQDYSAWRE GRWSNVPFDH 201: PATFETLAMD LEKKEGMKKD LIKFTKGKDY YRKVGKPWKR GYLLFGPPGT GKSTMISAMA NFLEYDVYDL ELTTVKDNSE LKKLMLDTKG KSIVVIEDID 301: CSLDLTGQRK KKKEEDEDEE EEEKKKEAEK LLKRERGERE SKVTLSGLLN AIDGLWSACS GEKIIVFTTN YLDKLDPALI RRGRMDNHIE MSYCRFEAFK 401: VLAKNYLEIE SHDLFGEIKR LVEETDMSPA DVAENLMPKS DEDDADICLT RLVKSLEEEK EKAKKLAEEE KMKKAARDAR RIKKKAEEEH KKKNKVEENG 501: DVSHDNGNHI |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)