suba logo
AT4G03450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 22492 Blast hits to 11630 proteins in 488 species: Archae - 24; Bacteria - 1675; Metazoa - 12211; Fungi - 1719; Plants - 2554; Viruses - 43; Other Eukaryotes - 4266 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AF071527EMBL:AL161496
EMBL:BT020384EMBL:BT020461EMBL:CP002687EnsemblPlants:AT4G03450
EnsemblPlants:AT4G03450.1entrez:827913Gene3D:1.25.40.20GeneID:827913
GO:GO:0016021GO:GO:0031347GO:GO:0071446GO:GO:2000031
Gramene:AT4G03450.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF52InterPro:IPR002110
InterPro:IPR020683InterPro:IPR026961InterPro:IPR032846KEGG:ath:AT4G03450
PANTHER:PTHR24177:SF52Pfam:PF12796Pfam:PF13637Pfam:PF13962
Pfscan:PS50297PhylomeDB:Q9ZT73PIR:G85043PROSITE:PS50297
Proteomes:UP000006548RefSeq:NP_192254.1SMART:SM00248SMR:Q9ZT73
STRING:3702.AT4G03450.1SUPFAM:SSF48403TAIR:AT4G03450TMHMM:TMhelix
UniGene:At.34175UniProt:Q9ZT73
Coordinates (TAIR10) chr4:-:1529612..1531736
Molecular Weight (calculated) 70471.10 Da
IEP (calculated) 7.23
GRAVY (calculated) 0.24
Length 641 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRAFHLIID CITGDTGSIQ MLVTNLYDLP GEYVSMNPEI FSAMRAGNVK FLDKMKTNNN TPLACFRNET GDFTLHLAAA WGRLELVKRI VSECPCLLLE
101: TNSKDQIPLH AAAAAGRLAV VEAFVARVNE ISDGLSEEER ERVNLYAMKD IDGNTALHLA LKGGHLKTAA CLVKANHLAS FLANNHGVSP LFTAIIAGSL
201: TLVEAMMYVP GQTCNLASKL EGRKSLVHAA LKAKNSDILD VILSEDPSLV NERDEEGRTC LSVAAYVGYY KGVVNLLHRS TSNVFECDDD GSYPIHMAVE
301: KGRVKIFLKL LKCCPDSQYL LNKQGQNILH IAAKSGKTGT YLLQVIKAYD LIKNDLIMEQ DVDGNTPLHL ATLTWRPRTV NILNKFTLGN HLHIRNKDGL
401: SALDIAESNL QSNYVFRERM TLMVLLCTCS PRGFKMIPTS GITLKSRSEK VAGNKYKDSI NVLLLVATLV ATVAFAAGIA IPGGFSSSTP KRGIAILDDD
501: DFLSIFLVFN TLAMQSSVLA IVALIWAQLG DPVLVHKTFH LALPALFVSL VSMSSAFFCG VVATTKHNPW LFDSIIFISI IFLFVVAYLL APYAIPQFPG
601: TPFLQRITKC YLDFMLLFVN EDDVDIVCEK KQETVHLYVA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)