AT4G03450.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 22492 Blast hits to 11630 proteins in 488 species: Archae - 24; Bacteria - 1675; Metazoa - 12211; Fungi - 1719; Plants - 2554; Viruses - 43; Other Eukaryotes - 4266 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:1529612..1531736 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70471.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 641 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTRAFHLIID CITGDTGSIQ MLVTNLYDLP GEYVSMNPEI FSAMRAGNVK FLDKMKTNNN TPLACFRNET GDFTLHLAAA WGRLELVKRI VSECPCLLLE 101: TNSKDQIPLH AAAAAGRLAV VEAFVARVNE ISDGLSEEER ERVNLYAMKD IDGNTALHLA LKGGHLKTAA CLVKANHLAS FLANNHGVSP LFTAIIAGSL 201: TLVEAMMYVP GQTCNLASKL EGRKSLVHAA LKAKNSDILD VILSEDPSLV NERDEEGRTC LSVAAYVGYY KGVVNLLHRS TSNVFECDDD GSYPIHMAVE 301: KGRVKIFLKL LKCCPDSQYL LNKQGQNILH IAAKSGKTGT YLLQVIKAYD LIKNDLIMEQ DVDGNTPLHL ATLTWRPRTV NILNKFTLGN HLHIRNKDGL 401: SALDIAESNL QSNYVFRERM TLMVLLCTCS PRGFKMIPTS GITLKSRSEK VAGNKYKDSI NVLLLVATLV ATVAFAAGIA IPGGFSSSTP KRGIAILDDD 501: DFLSIFLVFN TLAMQSSVLA IVALIWAQLG DPVLVHKTFH LALPALFVSL VSMSSAFFCG VVATTKHNPW LFDSIIFISI IFLFVVAYLL APYAIPQFPG 601: TPFLQRITKC YLDFMLLFVN EDDVDIVCEK KQETVHLYVA N |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)