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AT5G40020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pathogenesis-related thaumatin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G38660.1); Has 1558 Blast hits to 1540 proteins in 173 species: Archae - 0; Bacteria - 31; Metazoa - 56; Fungi - 80; Plants - 1384; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFI8eggNOG:ENOG410YBG3EMBL:AB010077EMBL:AK228070
EMBL:BT010875EMBL:CP002688EnsemblPlants:AT5G40020EnsemblPlants:AT5G40020.1
entrez:833999Gene3D:2.60.110.10GeneID:833999Gramene:AT5G40020.1
hmmpanther:PTHR31048hmmpanther:PTHR31048:SF8HOGENOM:HOG000238454InterPro:IPR001938
KEGG:ath:AT5G40020OMA:TCSAKEYPANTHER:PTHR31048Pfam:PF00314
Pfscan:PS51257Pfscan:PS51367PhylomeDB:Q9FLD4PIRSF:PIRSF002703
PRINTS:PR00347PROSITE:PS51367Proteomes:UP000006548RefSeq:NP_198818.1
SMART:SM00205SMR:Q9FLD4STRING:3702.AT5G40020.1SUPFAM:SSF49870
TAIR:AT5G40020UniGene:At.30311UniProt:Q9FLD4
Coordinates (TAIR10) chr5:-:16022896..16024294
Molecular Weight (calculated) 28095.50 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.14
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFQSTSLLQ LFIISSCIVY GKVTSHEVTF YVQNKCSFPI WPAVAPNSGH PVLASGGFYL PCGGIKRIDA PLGWSGRIWA RTGCDFTSNS KQACETGDCD
101: GHLECNGLIG KPPATLIQIA VQADKSKPNF YDVSLVDGYN LPVVVNSKPV SSKCTILGCH KDLKTTCPEE LQVLNEEGRV VACKSACLAF DNDRFCCRNA
201: YGTPEKCKRN TYSMLFKEAC PNYYSYAYET PPPLVTCSAK EYLITFCPSN WGHSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)