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AT1G70500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G23460.1); Has 4030 Blast hits to 4010 proteins in 486 species: Archae - 4; Bacteria - 1128; Metazoa - 14; Fungi - 1268; Plants - 1483; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G70500-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IF8F
EMBL:AC010796EMBL:CP002684EnsemblPlants:AT1G70500EnsemblPlants:AT1G70500.1
entrez:843386Gene3D:2.160.20.10GeneID:843386GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0016829GO:GO:0071555
Gramene:AT1G70500.1gramene_pathway:3.2.1.15gramene_pathway:PWY-1081hmmpanther:PTHR31375
hmmpanther:PTHR31375:SF29HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT1G70500ncoils:Coil
OMA:PCANETSPfam:PF00295PhylomeDB:Q9CAL5PIR:H96728
PROSITE:PS00502Proteomes:UP000006548RefSeq:NP_177207.1scanprosite:PS00502
SMART:SM00710SMR:Q9CAL5STRING:3702.AT1G70500.1SUPFAM:SSF51126
TAIR:AT1G70500TMHMM:TMhelixUniGene:At.52467UniProt:Q9CAL5
Coordinates (TAIR10) chr1:-:26566579..26568729
Molecular Weight (calculated) 50903.20 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.18
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)