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AT2G34790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATERNAL EFFECT EMBRYO ARREST 23 (MEE23); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: polar nucleus fusion, embryo development ending in seed dormancy; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30760.1); Has 4988 Blast hits to 4831 proteins in 776 species: Archae - 82; Bacteria - 2407; Metazoa - 5; Fungi - 1644; Plants - 646; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G34790-MONOMEReggNOG:COG0277eggNOG:ENOG410IEZVEMBL:AC004238
EMBL:BT004022EMBL:BT005187EMBL:CP002685EnsemblPlants:AT2G34790
EnsemblPlants:AT2G34790.1entrez:818044Gene3D:3.30.43.10Gene3D:3.30.465.10
GeneID:818044GO:GO:0005618GO:GO:0009506GO:GO:0009793
GO:GO:0010197GO:GO:0045551GO:GO:0050660Gramene:AT2G34790.1
hmmpanther:PTHR32448hmmpanther:PTHR32448:SF11HOGENOM:HOG000238933InterPro:IPR006094
InterPro:IPR012951InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169
KEGG:ath:AT2G34790OMA:MAFAISKPDB:4UD8PDBsum:4UD8
Pfam:PF01565Pfam:PF08031Pfscan:PS51387PIR:T00461
PROSITE:PS51387Proteomes:UP000006548RefSeq:NP_181025.1STRING:3702.AT2G34790.1
SUPFAM:SSF56176TAIR:AT2G34790tair10-symbols:EDA28tair10-symbols:MEE23
UniGene:At.43525UniGene:At.66396UniProt:O64743
Coordinates (TAIR10) chr2:-:14673998..14677237
Molecular Weight (calculated) 59650.30 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.24
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFAISKRNA TLFLVTLLLI SVPLSSSTLQ QDFVKCLVDN SDVSFPITAS FFSPDQNATL FKEELESTAQ NLRYLTPSNP KPVFIFEPLY ETHVQAAVVC
101: AKKLQLHLRL RSGGHDYEGL SFVAEDETPF VIVDLSKLRQ VDVDLDSNSA WAHAGATIGE VYYRIQEKSQ THGFPAGLCS SLGIGGHLVG GAYGSMMRKF
201: GLGADNVLDA RIVDANGQIL DRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPATVTV FTVTKTLEQD GTKVLYKWEQ IADKLDDDLF IRVIISPASK
301: TTKPGNRTIS MSYQAQFLGD SNRLLQVMQK SFPELGLTKK DCTEMSWIKS VMYIAGFPNS AAPEALLAGK SLFKNHFKAK SDFVKEPIPV EGLEGLWERF
401: LEEDSPLTIW NPYGGMMSRI SESEIPFPHR NGTLFKIQWL STWQDGKVSE ERHMKWIREM YSYMEQYVSK NPRQAYVNYR DLDLGTNEGE TDAREWGAKY
501: YKGNFERLVK IKGEFDPDNF FRHEQSVPTK IG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)