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AT1G02335.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : germin-like protein subfamily 2 member 2 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
germin-like protein subfamily 2 member 2 precursor (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 2264 Blast hits to 2183 proteins in 312 species: Archae - 0; Bacteria - 520; Metazoa - 1; Fungi - 98; Plants - 1608; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUISeggNOG:ENOG410YCIHEMBL:AC064879EMBL:AK176405
EMBL:CP002684EnsemblPlants:AT1G02335EnsemblPlants:AT1G02335.1entrez:3766642
Gene3D:2.60.120.10GeneID:3766642GO:GO:0005618GO:GO:0009506
GO:GO:0010497GO:GO:0030145GO:GO:0033609GO:GO:0045735
GO:GO:0046564GO:GO:0048046GO:GO:2000280Gramene:AT1G02335.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF18HOGENOM:HOG000235000InParanoid:Q9FZ27
InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT1G02335OMA:FACKENIPaxDb:Q9FZ27
Pfam:PF00190Pfam:Q9FZ27PhylomeDB:Q9FZ27PIR:F86153
PRIDE:Q9FZ27PRINTS:PR00325PRO:PR:Q9FZ27PROSITE:PS00725
ProteinModelPortal:Q9FZ27Proteomes:UP000006548RefSeq:NP_001077450.1scanprosite:PS00725
SMART:SM00835SMR:Q9FZ27STRING:3702.AT1G02335.1SUPFAM:SSF51182
TAIR:AT1G02335tair10-symbols:GL22UniGene:At.27586UniProt:Q9FZ27
Coordinates (TAIR10) chr1:-:463979..464876
Molecular Weight (calculated) 23442.50 Da
IEP (calculated) 8.84
GRAVY (calculated) 0.12
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNSRISIII ALSCIMITSI RAYDPDALQD LCVADKSHGT KLNGFPCKET LNITESDFFF AGISKPAVIN STMGSAVTGA NVEKIPGLNT LSVSLARIDY
101: APGGLNPPHT HPRATEVVYV LEGELEVGFI TTANKLFTKT IKIGEVFVFP RGLVHFQKNN GKSPASVLSA FNSQLPGTAS VAATLFAAEP ALPEDVLTKT
201: FQVGSKMVDK IKERLATKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)