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AT5G40670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PQ-loop repeat family protein / transmembrane family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19318eggNOG:ENOG410XQSDeggNOG:KOG3145EMBL:AB009052
EMBL:AY052257EMBL:AY060522EMBL:CP002688EnsemblPlants:AT5G40670
EnsemblPlants:AT5G40670.1entrez:834067GeneID:834067Genevisible:P57758
GO:GO:0005765GO:GO:0005774GO:GO:0006810GO:GO:0016021
Gramene:AT5G40670.1hmmpanther:PTHR13131hmmpanther:PTHR13131:SF5HOGENOM:HOG000192503
InParanoid:P57758InterPro:IPR005282InterPro:IPR006603KEGG:ath:AT5G40670
KO:K12386OMA:ITIVFDIPANTHER:PTHR13131PaxDb:P57758
Pfam:P57758Pfam:PF04193PhylomeDB:P57758PRIDE:P57758
PRO:PR:P57758ProteinModelPortal:P57758Proteomes:UP000006548Reactome:R-ATH-425393
Reactome:R-ATH-5223345RefSeq:NP_198883.1SMART:SM00679STRING:3702.AT5G40670.1
TAIR:AT5G40670TCDB:2.A.43.1.4TIGRfam:TIGR00951TIGRFAMs:TIGR00951
TMHMM:TMhelixUniGene:At.7422UniProt:P57758
Coordinates (TAIR10) chr5:+:16285968..16287591
Molecular Weight (calculated) 31028.90 Da
IEP (calculated) 7.59
GRAVY (calculated) 0.38
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MASWNSIPLE ISYEIVGWIA FASWSISFYP QLILNFRRRS VVGLNFDFVM LNLTKHSSYM IYNVCLYFSP VIQKQYFDTY GDKEMIPVAA NDVAFSIHAV
101: VMTAVTLFQI FIYERGPQKV SRLAIGIVVV VWGFAAICFF IALPTHSWLW LISIFNSIQV FMTCVKYIPQ AKMNFTRKST VGWSIGNILL DFTGGLANYL
201: QMVIQSIDQN SWKNFYGNMG KTLLSLISIF FDILFMFQHY VLYPEKKVSK SPETGEESNE PLIDSSHEHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)