AT1G04770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.985 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:1336564..1337767 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34661.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 303 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMMMIQRRGG ERQDSSAAAY NVVHKLPHGD SPYVRAKHVQ LVEKDAEAAI ELFWIAIKAR DRVDSALKDM ALLMKQQNRA EEAIDAIQSF RDLCSRQAQE 101: SLDNVLIDLY KKCGRIEEQV ELLKQKLWMI YQGEAFNGKP TKTARSHGKK FQVTVEKETS RILGNLGWAY MQLMDYTAAE AVYRKAQLIE PDANKACNLC 201: TCLIKQGKHD EARSILFRDV LMENKEGSGD PRLMARVQEL LSELKPQEEE AAASVSVECE VGIDEIAVVE GLDEFVKEWR RPYRTRRLPI FEEILPLRDQ 301: LAC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)