suba logo
AT3G49570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.924
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : response to low sulfur 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RESPONSE TO LOW SULFUR 3 (LSU3); BEST Arabidopsis thaliana protein match is: response to low sulfur 2 (TAIR:AT5G24660.1); Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J513eggNOG:ENOG410ZF0ZEMBL:AK118134EMBL:AL132964
EMBL:BT006123EMBL:CP002686EnsemblPlants:AT3G49570EnsemblPlants:AT3G49570.1
entrez:824119GeneID:824119Gramene:AT3G49570.1hmmpanther:PTHR34283
HOGENOM:HOG000238756KEGG:ath:AT3G49570ncoils:CoilOMA:RIVFLMD
PhylomeDB:Q9SCK2PIR:T46234Proteomes:UP000006548RefSeq:NP_190526.1
STRING:3702.AT3G49570.1TAIR:AT3G49570tair10-symbols:LSU3UniGene:At.47231
UniProt:Q9SCK2
Coordinates (TAIR10) chr3:-:18372659..18372952
Molecular Weight (calculated) 11178.30 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.52
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MGKGGGYVTV AAEEVEELRR RNGELEREME EMKKEMVQLW RRTVVAEEAE ERLCSQLAEL EVESLDQARD YHSRIVFLMD QISRLSSSSL EVVVTNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)