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AT1G72890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 5933 Blast hits to 5765 proteins in 247 species: Archae - 0; Bacteria - 133; Metazoa - 8; Fungi - 0; Plants - 5786; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G72890EnsemblPlants:AT1G72890.1entrez:843620
ExpressionAtlas:F4IF05Gene3D:3.40.50.10140Gene3D:3.40.50.300GeneID:843620
GO:GO:0007165GO:GO:0043531Gramene:AT1G72890.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF169InterPro:IPR000157InterPro:IPR002182InterPro:IPR027417
iPTMnet:F4IF05Pfam:PF00931Pfam:PF01582Pfscan:PS50104
PRIDE:F4IF05PROSITE:PS50104ProteinModelPortal:F4IF05Proteomes:UP000006548
RefSeq:NP_177432.1SMART:SM00255SMR:F4IF05SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT1G72890UniGene:At.48364UniProt:F4IF05
Coordinates (TAIR10) chr1:+:27429947..27431717
Molecular Weight (calculated) 50625.10 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.39
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDDSKL VDGITEKIST
201: KLFSEKPRND NILIGIDQHM GELYPLFNLN SNEDVQVIGI WGRGSNGRSA LASHVYQNIK HHFEAHCFLE DVRRISLHFR DSHLQDELLS NMQGEGLTTK
301: NCHRCLKTIK ARLRNKKVLL VANDVDKLEQ FDALAEEFSW FGPGSRIIIT TQDRQLLISS VVRSVYEVKL LRCYAVRELF RSNAFKERER DDPVGFDQST
401: YRAMYISGHV FLTLRYIFTL LCDRGQLRER INAIVHSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)