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AT4G20110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 10871276
AmiGO : golgi 10888666
SwissProt : golgi 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VACUOLAR SORTING RECEPTOR 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VACUOLAR SORTING RECEPTOR 7 (VSR7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 14212 Blast hits to 6790 proteins in 278 species: Archae - 2; Bacteria - 151; Metazoa - 12853; Fungi - 13; Plants - 489; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHDNeggNOG:ENOG41105IFEMBL:AL021637EMBL:AL161552
EMBL:AY136303EMBL:BT000395EMBL:CP002687EnsemblPlants:AT4G20110
EnsemblPlants:AT4G20110.1entrez:827757ExpressionAtlas:Q8L7E3GeneID:827757
Genevisible:Q8L7E3GO:GO:0000139GO:GO:0005509GO:GO:0015031
GO:GO:0016021hmmpanther:PTHR22765hmmpanther:PTHR22765:SF56HOGENOM:HOG000241019
InParanoid:Q8L7E3InterPro:IPR001881InterPro:IPR003137InterPro:IPR018097
PaxDb:Q8L7E3Pfam:PF02225Pfam:Q8L7E3PhylomeDB:Q8L7E3
PIR:T04895PRIDE:Q8L7E3PRO:PR:Q8L7E3PROSITE:PS00010
PROSITE:PS00022PROSITE:PS01186PROSITE:PS01187ProteinModelPortal:Q8L7E3
Proteomes:UP000006548RefSeq:NP_193744.1scanprosite:PS01187SMART:SM00179
SMR:Q8L7E3STRING:3702.AT4G20110.2SUPFAM:SSF52025TAIR:AT4G20110
tair10-symbols:BP80-3;1tair10-symbols:VSR3;1tair10-symbols:VSR7TMHMM:TMhelix
UniGene:At.32746UniProt:Q8L7E3
Coordinates (TAIR10) chr4:+:10875567..10878545
Molecular Weight (calculated) 69803.70 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.35
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG GFLIGSVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG
101: CYFALKAWHA QQAGAAAVLV ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDKRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW
301: WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSEPAICLN TGLETNECLE NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS DTRNGLTFSA CSDSVSTGCK
501: CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)