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AT3G23090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytoskeleton
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23653471 (2013): cytoskeleton microtubules
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3); Has 678 Blast hits to 638 proteins in 104 species: Archae - 2; Bacteria - 22; Metazoa - 209; Fungi - 27; Plants - 299; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
DNASU:821884eggNOG:ENOG410IVT8eggNOG:ENOG4111YDYEMBL:AB026655
EMBL:AK227638EMBL:BT003083EMBL:CP002686EnsemblPlants:AT3G23090
EnsemblPlants:AT3G23090.1entrez:821884ExpressionAtlas:Q84WL6GeneID:821884
GO:GO:0005737GO:GO:0005874hmmpanther:PTHR31358InterPro:IPR027329
ncoils:CoilPfam:PF06886Proteomes:UP000006548RefSeq:NP_188950.1
TAIR:AT3G23090UniGene:At.43419UniProt:Q84WL6
Coordinates (TAIR10) chr3:-:8214533..8216983
Molecular Weight (calculated) 37784.00 Da
IEP (calculated) 9.57
GRAVY (calculated) -1.15
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MDICMDKEPD GVVVYANGDS CNPNQENVSE PLLDSVSRDD ANVHTELRYG EENIEVNEYD VKECTSEIPV GKPIGDDFES KDVTKSSLHA KHASKSGRGN
101: NKTRNTVPQP FSLATEKRAS STRSFTSESL ESAGLKKFPD GHSKVQSQAT KVPRKPLQPK NKKLSDEEDS CSVASYATSG AKSAKSRTVV TAAPSFRSTE
201: RAEKRKEFYT KLEEKHQAME AEKTQSEARN KEATEAALRQ LRKSLRFKAN PMPKFYHEGP PPKVELKKPL PTRAKSPKLG RRNPKEGNRA KGASRRHETR
301: KTLVISKEDH DDETTRNADQ INHKEMNRNL EPETAFAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)