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AT2G28250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28250-MONOMERBioCyc:ARA:GQT-1525-MONOMERBioGrid:2721EC:2.7.11.1
eggNOG:COG0515eggNOG:KOG1187EMBL:AC006202EMBL:AK226256
EMBL:AY065457EMBL:BT004417EMBL:CP002685EnsemblPlants:AT2G28250
EnsemblPlants:AT2G28250.1EnsemblPlants:AT2G28250.2entrez:817371Gene3D:2.60.120.200
GeneID:817371Genevisible:Q8VYY5GO:GO:0004674GO:GO:0005524
GO:GO:0005768GO:GO:0005886GO:GO:0010008GO:GO:0010089
GO:GO:0012505GO:GO:0016021GO:GO:0031902GO:GO:0051020
Gramene:AT2G28250.1Gramene:AT2G28250.2hmmpanther:PTHR27001hmmpanther:PTHR27001:SF78
HOGENOM:HOG000116550InParanoid:Q8VYY5InterPro:IPR000719InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441iPTMnet:Q8VYY5
KEGG:ath:AT2G28250OMA:NCSSSCHPaxDb:Q8VYY5Pfam:PF00069
Pfam:Q8VYY5Pfscan:PS50011PhylomeDB:Q8VYY5PIR:F84682
PRIDE:Q8VYY5PRO:PR:Q8VYY5PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:Q8VYY5Proteomes:UP000006548RefSeq:NP_001031435.1
RefSeq:NP_850115.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q8VYY5STRING:3702.AT2G28250.1SUPFAM:SSF56112TAIR:AT2G28250
tair10-symbols:NCRKTMHMM:TMhelixUniGene:At.28473UniProt:Q8VYY5
Coordinates (TAIR10) chr2:+:12044004..12046339
Molecular Weight (calculated) 62195.40 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.16
Length 565 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMRVETALA ILLVLISIQQ CYGGVSNYTC TCFSSGNRSD ILESNCSTSC NCRPDRDQWV CLCPANGFPV IAIGGSNSSC FTSCNCSAGA TKSSKKQYLS
101: RKLVIVILLF CGVLISLAFL ASMICYICRK DKFSGQTPSV SSDRESSWHS SANLINRKSS VSQSKISISS SVAGCFFQNA SLFCVSKPET IHGAIFQFSY
201: TELEQATNKF SSNSVIGHGG SSCVYRGQLK DGKTAAIKRL NTPKGDDTDT LFSTEVELLS RLHHYHVVPL IGYCSEFHGK HAERLLVFEY MSYGSLRDCL
301: DGELGEKMTW NIRISVALGA ARGLEYLHEA AAPRILHRDV KSTNILLDEN WHAKITDLGM AKCLSSDGLQ SGSSSPTTGL QGTFGYFAPE YAIAGCASQM
401: SDVFSFGVVL LELITGRKPI QKPSNNKGEE SLVIWAVPRL QDSKRVIEEL PDPRLNGKFA EEEMQIMAYL AKECLLLDPE SRPTMREVVQ ILSTITPDTS
501: SRRRNFPINY LFQSNEKKKE SKVGWSRGGS KSGQEEETVD LTEPRFESFC LPNVKPVLLE PSAHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)