AT4G03340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.798 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G03520.1); Has 946 Blast hits to 946 proteins in 119 species: Archae - 0; Bacteria - 46; Metazoa - 549; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1467865..1469465 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51670.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKVYRKLIW IRDPLARLKR HVSSHSGFRF FRDRKWMFPF LASLVLSVTL LMSVLYVQLE TSYVEEPLPF DNLSEETNDY FVESQLRMSL NSTLDSTSSE 101: VPRLAYLISG TKGDSLRMMR TLQAVYHPRN QYVLHLDLEA PPKERLELAM SVKSDQTFRE VENVRVMSQS NLVTYKGPTM IACTLQAVAI LLKESLDWDW 201: FINLSASDYP LVTQDDMLYV FANLSRNVNF IEHMKLTGWK LNQRAKSIIV DPGLYLSKKT EIAWTTQHRS LPTSFTLFTG SAWVVLTRSF LEYSILGWDN 301: FPRTILMYYT NFVSSPEGYF HTLICNTEEF KSTAIGHDLH YIAWDYPPKQ HPNSLSMKDF DKMVKSKAPF ARKFHKNDPV LDKIDRELLG RTHRFSSGAW 401: CIGSSENGAD PCSVRGDDSA LKPGPGAERL KELLQTLLSD EFRIKQCS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)