AT5G42690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 811 Blast hits to 793 proteins in 155 species: Archae - 4; Bacteria - 209; Metazoa - 31; Fungi - 2; Plants - 489; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17116630..17119492 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 60814.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMSSSSSSS NGSSSYTRCV KTPSSTNTNI GKKLKGCENG VVNRKALNRE KIITLQEDVE KLRKKLRLEE NIHRAMERAF SRPLGALPRL PPFLPPSVLE 101: LLAEVAVLEE ELVRLEEHIV HCRQELYQEA VFTSSSIENL KCSPAFPKHW QTKSKSASTS ARESESPLSR APCSVSVCRK GKENKLSATS IKTPMKKTTI 201: AHTQLNKSLE AQKLKDSHRC RKTNAERSSH GGGDEPNKIS EDLVKCLSNI FMRMSSIKRS MVTKSQENDK DTAFRDPYGI CSSFRRRDIG RYKNFSDVEE 301: ASLNQNRTSS SSLFLIRQLK RLLGRLSLVN MQKLNQQEKL AFWINIYNSC MMNGFLEHGI PESPDMVTLM QKATINVGGH FLNAITIEHF ILRLPHHSKY 401: ISPKGSKKNE MAVRSKFGLE LSEPLVTFAL SCGSWSSPAV RVYTASKVEE ELEVAKREYL EASVGISVVK IGIPKLMDWY SHDFAKDIES LLDWIFLQLP 501: TELGKDALNC VEQGMSQSPS STLVHIIPYD FTFRYLFSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)