AT5G66600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G23700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26575105..26578315 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69093.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.18 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||
| Length | 614 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFGVGGGGG RMLDLRIVQN HKRSKSASFP EKKRVEGDKT SNSSHEASQR MKLDMGRSNE SKHNQYHSNT ETSLKQEITH LETRLQDQFK VRCALEKALG 101: YRTASSYVLT ETNDIAMPKP ATDLIKDVAV LEMEVIHLEQ YLLSLYRKAF EQQISSVSPN LENKKPKSPP VTTPRRRLDF SEDDDTPSKT DQHTVPLLDD 201: NQNQSKKTEI AAVDRDQMDP SFRRSHSQRS AFGSRKASPE DSWGKASRSC HSQPLYVQNG DNLISLAEHL GTRISDHVPE TPNKLSEGMV KCMSEIYCKL 301: AEPPSVLHRG LSSPNSSLSS SAFSPSDQYD TSSPGFGNSS SFDVRLDNSF HVEGEKDFSG PYSSIVEVLC IYRDAKKASE VEDLLQNFKS LISRLEEVDP 401: RKLKHEEKLA FWINVHNALV MHAFLAYGIP QNNVKRVLLL LKAAYNIGGH TISAEAIQSS ILGCKMSHPG QWLRLLFASR KFKAGDERLA YAIDHPEPLL 501: HFALTSGSHS DPAVRVYTPK RIQQELETSK EEYIRMNLSI RKQRILLPKL VETFAKDSGL CPAGLTEMVN RSIPESSRKC VKRCQSSTSK PRKTIDWIPH 601: SFTFRYLILR EAAK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)