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AT4G24790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2812eggNOG:ENOG410IUKKEMBL:AL035356EMBL:AL161562
EMBL:CP002687EnsemblPlants:AT4G24790EnsemblPlants:AT4G24790.1EnsemblPlants:AT4G24790.2
entrez:828581Gene3D:3.40.50.300GeneID:828581Genevisible:F4JRP8
GO:GO:0003677GO:GO:0003887GO:GO:0005524GO:GO:0006260
GO:GO:0009360Gramene:AT4G24790.1Gramene:AT4G24790.2hmmpanther:PTHR11669
hmmpanther:PTHR11669:SF3HOGENOM:HOG000244059InParanoid:F4JRP8InterPro:IPR008921
InterPro:IPR012763InterPro:IPR027417KEGG:ath:AT4G24790ncoils:Coil
OMA:ITHCQKFPaxDb:F4JRP8Pfam:F4JRP8Pfam:PF13177
PIR:T05555PRIDE:F4JRP8PRO:PR:F4JRP8ProteinModelPortal:F4JRP8
Proteomes:UP000006548RefSeq:NP_001119046.1RefSeq:NP_194210.2SMR:F4JRP8
STRING:3702.AT4G24790.1SUPFAM:SSF48019SUPFAM:SSF52540TAIR:AT4G24790
TIGRfam:TIGR02397TIGRFAMs:TIGR02397UniGene:At.54505UniProt:F4JRP8
Coordinates (TAIR10) chr4:+:12778222..12781345
Molecular Weight (calculated) 93838.80 Da
IEP (calculated) 7.67
GRAVY (calculated) -0.37
Length 857 amino acids
Sequence (TAIR10)
(BLAST)
001: MGETRRHSVD VPITRTLVAL RRVRSLRDPC TTSMSKFASL LDNVKWETGS NNGISLQFVE HADDACKAAA DAPVGLIPFG SYSIMEELES GCDLHKLSSK
101: VINVEGDACS RSSERSCSDL SVKGRDLACN APSISHVEEA GSGGRYRTHY STKLASSVGE YGSRLGSPMN STNHSYYGDE DVDFDSQSNR GCGITYCWSR
201: TPRYRGSNQS SDVEEYPLLP GNGNGESDVV TPSHEVLSRS LSQKFRPKSF DELVGQEVVV KCLLSTILRG RITSVYLFHG PRGTGKTSTS KIFAAALNCL
301: SQAAHSRPCG LCSECKSYFS GRGRDVMETD SGKLNRPSYL RSLIKSASLP PVSSRFKVFI IDECQLLCQE TWGTLLNSLD NFSQHSVFIL VTSELEKLPR
401: NVLSRSQKYH FSKVCDADIS TKLAKICIEE GIDFDQGAVD FIASKSDGSL RDAEIMLDQL SLLGKRITTS LAYKLIGVVS DDELLDLLDL AMSSDTSNTV
501: IRARELMRSK IDPMQLISQL ANVIMDIIAG NSQESSSATR LRFLTRHTSE EEMQKLRNAL KILSDAEKHL RASKNQTTWL TVALLQLSNT DSSSFATDEN
601: GRNQINKDVE LSSTSSGCPG DVIKSDAEKG QERNCNETVE SVWKTVTDLC CSDSLKRFLW KRGRLTSLTV DKGVAIAELE FYTPQHVARA EKSWKLIADS
701: FQSVLGCNVE IQMNLVISAC SPPKSAKAAA SLFFGLFSCS RRMLHKSYLT TRTDSDCASE KPAVTNSLRS CQGNVLRARS VRSSANASSR MSCSSDQGDA
801: TSAMCTPHIP PGEKRPEDDT DVLCWKKTPL GKGQSETQNS KSSRLIGRVL PCSTAAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)