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AT1G77580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF869)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 179109 Blast hits to 86523 proteins in 3458 species: Archae - 2679; Bacteria - 35310; Metazoa - 76898; Fungi - 14876; Plants - 11116; Viruses - 700; Other Eukaryotes - 37530 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G77580EnsemblPlants:AT1G77580.1entrez:844093hmmpanther:PTHR31580
hmmpanther:PTHR31580:SF2ncoils:CoilPfam:PF05911
Coordinates (TAIR10) chr1:-:29144632..29146600
Molecular Weight (calculated) 71589.10 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.74
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MESRDDEIQS PTVSLEVETE KEELKDSMKT LAEKLSAALA NVSAKDDLVK QHVKVAEEAV AGWEKAENEV VELKEKLEAA DDKNRVLEDR VSHLDGALKE
101: CVRQLRQARD EQEQRIQDAV IERTQELQSS RTSLENQIFE TATKSEELSQ MAESVAKENV MLRHELLARC EELEIRTIER DLSTQAAETA SKQQLDSIKK
201: VAKLEAECRK FRMLAKSSAS FNDHRSTDSH SDGGERMDVS CSDSWASSTL IEKRSLQGTS SSIELDLMGD FLEMERLVAL PETPDGNGKS GPESVTEEVV
301: VPSENSLASE IEVLTSRIKE LEEKLEKLEA EKHELENEVK CNREEAVVHI ENSEVLTSRT KELEEKLEKL EAEKEELKSE VKCNREKAVV HVENSLAAEI
401: EVLTSRTKEL EEQLEKLEAE KVELESEVKC NREEAVAQVE NSLATEIEVL TCRIKQLEEK LEKLEVEKDE LKSEVKCNRE VESTLRFELE AIACEKMELE
501: NKLEKLEVEK AELQISFDII KDKYEESQVC LQEIETKLGE IQTEMKLVNE LKAEVESQTI AMEADAKTKS AKIESLEEDM RKERFAFDEL RRKCEALEEE
601: ISLHKENSIK SENKEPKIKQ VCLQSSGVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)