suba logo
AT5G18700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase family protein with ARM repeat domain
Curator
Summary (TAIR10)
Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo. Required for cell plate expansion in cytokinesis.
Computational
Description (TAIR10)
Protein kinase family protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33940.2); Has 133671 Blast hits to 131461 proteins in 4761 species: Archae - 230; Bacteria - 15366; Metazoa - 49337; Fungi - 13216; Plants - 32681; Viruses - 728; Other Eukaryotes - 22113 (source: NCBI BLink).
Protein Annotations
EC:2.7.11.1eggNOG:ENOG410XRQ6eggNOG:KOG0597EMBL:AC051627
EMBL:CP002688EnsemblPlants:AT5G18700EnsemblPlants:AT5G18700.1entrez:831988
Gene3D:1.25.10.10GeneID:831988Genevisible:F4JY37GO:GO:0000911
GO:GO:0000914GO:GO:0005524GO:GO:0005819GO:GO:0005874
GO:GO:0006468GO:GO:0007349GO:GO:0008017GO:GO:0009506
GO:GO:0009524GO:GO:0009555GO:GO:0009556GO:GO:0009574
GO:GO:0010245GO:GO:0010342GO:GO:0016740Gramene:AT5G18700.1
hmmpanther:PTHR22983hmmpanther:PTHR22983:SF15InParanoid:F4JY37InterPro:IPR000719
InterPro:IPR008271InterPro:IPR011009InterPro:IPR011989InterPro:IPR016024
iPTMnet:F4JY37KEGG:ath:AT5G18700KO:K17545OMA:AKGHKSG
PaxDb:F4JY37Pfam:PF00069Pfscan:PS50011PhylomeDB:F4JY37
PRIDE:F4JY37PRO:PR:F4JY37PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:F4JY37Proteomes:UP000006548RefSeq:NP_197371.2scanprosite:PS00108
SMART:SM00220SMR:F4JY37SUPFAM:SSF48371SUPFAM:SSF56112
TAIR:AT5G18700tair10-symbols:EMB3013tair10-symbols:RUKUniGene:At.49802
UniProt:F4JY37
Coordinates (TAIR10) chr5:-:6235387..6240733
Molecular Weight (calculated) 152292.00 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.28
Length 1366 amino acids
Sequence (TAIR10)
(BLAST)
0001: MNQYHIYEAI GHGKCSTVYK GRKKKTIEYF ACKSVDKSRK NKVLQEVRIL HSLNHPNVLK FYAWYETSAH MWLVLEYCVG GDLRTLLQQD CKLPEESIYG
0101: LAYDLVIALQ YLHSKGIIYC DLKPSNILLD ENGHIKLCDF GLSRKLDDIS KSPSTGKRGT PYYMAPELYE DGGIHSFASD LWALGCVLYE CYTGRPPFVA
0201: REFTQLVKSI HSDPTPPLPG NASRSFVNLI ESLLIKDPAQ RIQWADLCGH AFWKSKINLV QLPTQPAFDD MIGINTKPCL SERNGDRPNK TPPKYREKDR
0301: KGGSKQNENS IQGSKGHETP IKGTPGGSKA QAKLPSRATE EKHGGRPAAN RQVNILRLSR IAKANLQKEN EKENYRRPLP NSNENCAEVK IDNTDMELDF
0401: DENNDDEGPD ESEGTENTSC AQEERVMSHN ENHRRQRVVS SNVPDENSSA NETPTLGEAR DCHEDQSEPM DMSAAPPSAS PQLKTHRGRE TSGVAVNHDS
0501: SKAPTSLTDV FWHISDLSVR PVMPSRKSDK EAVHSLSFET PQPSDFSKKG KQELEPLNNR IITVLSGSSS GLSEKQNLIR YLETLSTNAD AANILTNGPI
0601: MLVLVKVLRL SKTPAFRVQI ASLIGLLIRH STSIEDDLAN SGILDSLTNG LRDKHEKVRR FSMAALGELL FYISTQNEHK DFKPPESPSK ETRSASGWQV
0701: SNALISLVSS VLRKGEDDLT QVYALRTIEN ICSQGAYWAT RFSSQDLISN LCYIYKATGK QESMRQTAGS CLVRLARFNP PCIQTVVEKL SLKEIASSFV
0801: KGSAREQQVC LNLLNMAMIG SHTFTSFGRH LVTLTEEKNL FPSLLSIIEQ GTEVLRGKAL LFVAFLCKNS RRWLTNFFCN ARFLPVVDRL AKEKDSYLQQ
0901: CLEAFVNVIA SIIPGMLDTI TNDIQQLMTG RRHGPVSPLN SRAPVKTNAH LFPVVLHLLG SSSFKNKMVT PQVLRQLANL TKLVEASFQG RDDFRVTLLQ
1001: VLECITGDAP LVTQNGEIII REILPSLAAI YNGNKDGDAR FLCLKIWFDS LTILLTECTE IEQQISEDLK SISNSHFLPL YPALIQDEDP IPAYAQKLLV
1101: MLVEFDYIKI SNLLRHNTVS QCFEFLLGDL SSANVNNVKL CLALASAPEM ESKLLSQLKV VRRIGNLLEF VNAKDMEDFL EPTLSLCRAF LLRSLGNKKG
1201: LSSNYTKEPT LLSEASFTFE VDPQECIRDI ADFGSNIGLF LHFAGLDDDT SIAVADIASE CVVLLLKAAS REATTGFLTN LPKITPILDS WRRRKSTELH
1301: LLVLKRVLHC LGYACKQYLS QAMILSISGH DVSKINAIVS EMKNSDAAGL NSIASLVAME LQRLPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)