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AT1G66250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 12805588
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2879 Blast hits to 2803 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 66; Plants - 2798; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G66250-MONOMERCAZy:CBM43CAZy:GH17EC:3.2.1.39
eggNOG:ENOG410IEQ4eggNOG:ENOG410ZF4VEMBL:AC066691EMBL:BX814184
EMBL:CP002684EnsemblPlants:AT1G66250EnsemblPlants:AT1G66250.1entrez:842942
Gene3D:3.20.20.80GeneID:842942Genevisible:Q9C7U5GO:GO:0005886
GO:GO:0005975GO:GO:0006952GO:GO:0031225GO:GO:0042973
GO:GO:0046658Gramene:AT1G66250.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF52
HOGENOM:HOG000238220InParanoid:Q9C7U5InterPro:IPR000490InterPro:IPR012946
InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT1G66250KO:K19891
OMA:YCTAREGPaxDb:Q9C7U5Pfam:PF00332Pfam:PF07983
Pfam:Q9C7U5PhylomeDB:Q9C7U5PIR:E96687PRIDE:Q9C7U5
PRO:PR:Q9C7U5PROSITE:PS00587ProteinModelPortal:Q9C7U5Proteomes:UP000006548
RefSeq:NP_176799.2scanprosite:PS00587SMART:SM00768SMR:Q9C7U5
SUPFAM:SSF51445TAIR:AT1G66250UniGene:At.49486UniProt:Q9C7U5
Coordinates (TAIR10) chr1:+:24693063..24695416
Molecular Weight (calculated) 54209.40 Da
IEP (calculated) 5.57
GRAVY (calculated) 0.04
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLHLLLL SLSLLVLASA SPSPPADEGS YIGVNIGTDL SDMPHPTQVV ALLKAQEIRH IRLYNADPGL LIALANTGIK VIISIPNDQL LGIGQSNSTA
101: ANWVKRNVIA HYPATMITAV SVGSEVLTSL SNAAPVLVSA IKNVHAALLS ANLDKLIKVS TPLSTSLILD PFPPSQAFFN RSLNAVIVPL LSFLQSTNSY
201: LMVNVYPYID YMQSNGVIPL DYALFKPIPP NKEAVDANTL VRYSNAFDAM VDATYFAMAF LNFTNIPVLV TESGWPSKGE TNEPDATLDN ANTYNSNLIR
301: HVLNKTGTPK RPGIAVSTYI YELYNEDTKA GLSEKNWGLF NANGEPVYVL RLTNSGSVLA NDTTNQTYCT AREGADTKML QAALDWACGP GKIDCSPIKQ
401: GETCYEPDNV VAHANYAFDT YYHQTGNNPD ACNFNGVASI TTTDPSHGTC VFAGSRGNGR NGTSVNITAP SANSTTSSGI RSDLYYSRGI WSILTVMILN
501: VANIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)