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AT2G37080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ROP interactive partner 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROP interactive partner 3 (RIP3); LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 4 (TAIR:AT3G53350.1); Has 147635 Blast hits to 77239 proteins in 3391 species: Archae - 1987; Bacteria - 30902; Metazoa - 62424; Fungi - 12574; Plants - 8109; Viruses - 683; Other Eukaryotes - 30956 (source: NCBI BLink).
Protein Annotations
BioGrid:3628eggNOG:ENOG410IKB1eggNOG:ENOG410YE21EMBL:AC006260
EMBL:AK226196EMBL:BT020383EMBL:BT020462EMBL:CP002685
EnsemblPlants:AT2G37080EnsemblPlants:AT2G37080.1entrez:818284GeneID:818284
Genevisible:Q9ZQC5GO:GO:0009507Gramene:AT2G37080.1hmmpanther:PTHR34224
hmmpanther:PTHR34224:SF4HOGENOM:HOG000238437InParanoid:Q9ZQC5InterPro:IPR029688
iPTMnet:Q9ZQC5KEGG:ath:AT2G37080ncoils:CoilOMA:HHAESAY
PANTHER:PTHR34224PaxDb:Q9ZQC5Pfam:Q9ZQC5PhylomeDB:Q9ZQC5
PIR:C84788PRIDE:Q9ZQC5PRO:PR:Q9ZQC5ProteinModelPortal:Q9ZQC5
Proteomes:UP000006548RefSeq:NP_181245.1SMR:Q9ZQC5STRING:3702.AT2G37080.1
TAIR:AT2G37080tair10-symbols:RIP3UniGene:At.27536UniProt:Q9ZQC5
Coordinates (TAIR10) chr2:-:15581565..15584057
Molecular Weight (calculated) 65861.40 Da
IEP (calculated) 4.87
GRAVY (calculated) -1.02
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTPKPRPGS LEVPQKKSPA STPKTARKLK TSESDPVSSP NTKIRTPKTQ SPKVVADRRS PRTPVNEIQK KRTGKTPELA SQISQLQEEL KKAKEQLSAS
101: EALKKEAQDQ AEETKQQLME INASEDSRID ELRKLSQERD KAWQSELEAM QRQHAMDSAA LSSTMNEVQK LKAQLSESEN VENLRMELNE TLSLVEKLRG
201: ELFDAKEGEA QAHEIVSGTE KQLEIANLTL EMLRSDGMKM SEACNSLTTE LEQSKSEVRS LEQLVRQLEE EDEARGNANG DSSSVEELKE EINVARQEIS
301: QLKSAVEVTE RRYHEEYIQS TLQIRTAYEQ VDEVKSGYAQ REAELGEELK KTKAERDSLH ERLMDKEAKL RILVDENEIL NSKIKEKEEV YLNLENSLNQ
401: NEPEDTGELK KLESDVMELR ANLMDKEMEL QSVMSQYESL RSEMETMQSE KNKAIDEALA KLGSLTEEAD KSGKRAENAT EQLGAAQVTN TELEAELRRL
501: KVQCDQWRKA AEAAATMLSG GNNNNNSNGK YVERTGSLES PLRRRNVNMS PYMGETDDEL SSPKKKNGSM LKKIGVLLKK SQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)