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AT3G21140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21908688 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxamine 5'-phosphate oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT1G51560.1); Has 650 Blast hits to 650 proteins in 229 species: Archae - 0; Bacteria - 379; Metazoa - 7; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0748eggNOG:ENOG410IF7XEMBL:AY099546EMBL:BT002122
EMBL:CP002686EnsemblPlants:AT3G21140EnsemblPlants:AT3G21140.1entrez:821666
Gene3D:2.30.110.10GeneID:821666GO:GO:0010181GO:GO:0016491
Gramene:AT3G21140.1hmmpanther:PTHR13343hmmpanther:PTHR13343:SF16HOGENOM:HOG000265831
IntAct:Q8L637InterPro:IPR012349KEGG:ath:AT3G21140OMA:NEFASTE
Pfam:PF13883PhylomeDB:Q8L637Proteomes:UP000006548RefSeq:NP_188751.1
SMR:Q8L637STRING:3702.AT3G21140.1SUPFAM:SSF50475TAIR:AT3G21140
UniGene:At.27550UniProt:Q8L637
Coordinates (TAIR10) chr3:-:7409696..7412086
Molecular Weight (calculated) 42853.80 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.38
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)