AT3G21140.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Pyridoxamine 5'-phosphate oxidase family protein | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT1G51560.1); Has 650 Blast hits to 650 proteins in 229 species: Archae - 0; Bacteria - 379; Metazoa - 7; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:7409696..7412086 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42853.80 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||
Length | 387 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH 101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT 201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV 301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK |
||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)